Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 120
Gene Information
Gene Symbol
PDE 120
Chromosome Locus
At5g16620
Alleles in Database
2
See List
OR
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Identity Confidence
Confirmed
Alias Symbol
TIC 40
(H.M. Li) Alternate Name
Gene Class
Seed Pigment
Predicted Function
Chloroplast Protein Import (Tic40)
Function Details
Protein translocation at the inner envelope of chloroplasts
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Border Recovery
H.M. Li (1 allele)
Database Release
March, 2002
Predicted Sequences
Gene:
3840 nucleotides
mRNA:
1735 nucleotides
Protein:
447 amino acids
cDNA Status
FLcDNA Available:
AF428299
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (88%)
Model Genomes:
None
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
250080_at
Mutant Information
Allele Symbol
pde 120
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
2490
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16059
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 8
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2002
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
27.7 %
Chi - Square
4.5
Seeds Counted
1121
Percent Top Half
50.8 %
Chi - Square
<0.1
Average Seed Length
Average Embryo Length