SeedGenes Profile: PDE 120

Gene Information Gene Symbol PDE 120 Chromosome Locus At5g16620   Alleles in Database 2   See List OR Show All Identity Confidence Confirmed Alias Symbol TIC 40 (H.M. Li) Alternate Name Gene Class Seed Pigment Predicted Function Chloroplast Protein Import (Tic40) Function Details Protein translocation at the inner envelope of chloroplasts Gene Evidence Double Border Recovery Meinke / Syngenta (1 allele) Border Recovery H.M. Li (1 allele) Database Release March, 2002 Predicted Sequences Gene: 3840 nucleotides mRNA: 1735 nucleotides Protein:   447 amino acids cDNA Status FLcDNA Available: AF428299 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (88%) Model Genomes:   None Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 250080_at

Mutant Information Allele Symbol pde 120 tic 40-1 Mutant Class Seed Pigment Seed Pigment Source of Mutant Meinke / Syngenta Li / Feldmann Mutant Line Number 2490 CS2774 Ecotype Columbia Wassilewskija Genetic Background     ABRC Stock CS16059   Mutagen Treatment T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Flanking Sequence Details  (Help)   Location of Mutation Exon 8 Exon 3 Terminal Phenotype Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Sequence Identity Database Release March, 2002 December, 2010 Seed Color Pale Yellow   Embryo Color Pale Yellow   Percent Mutant Seeds 27.7 %   Chi - Square 4.5   Seeds Counted 1121   Percent Top Half 50.8 %   Chi - Square <0.1   Average Seed Length     Average Embryo Length