SeedGenes Profile: PDE 129

Gene Information Gene Symbol PDE 129 Chromosome Locus At5g62790   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol DXR (L.J. Qu) Sequence Identity Gene Class Seed Pigment Predicted Function 1-Deoxyxylulose 5-Phosphate Reductoisomerase Function Details Biosynthesis of isoprenoids required for normal chloroplast development Gene Evidence Border Recovery Qu / GABI (1 allele) Double Border Recovery Meinke / Syngenta (2 alleles) Database Release March, 2002 Predicted Sequences Gene: 3315 nucleotides mRNA: 1814 nucleotides Protein:   477 amino acids cDNA Status FLcDNA Available: AY054682 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Brassica napus (94%) Model Genomes:   Synechocystis (65%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 247401_at

Mutant Information Allele Symbol pde 129-2 Mutant Class Seed Pigment Source of Mutant Meinke / Syngenta Mutant Line Number 80523 Ecotype Columbia Genetic Background qrt ABRC Stock CS16147 Mutagen Treatment T-DNA Insertion Mutant Yes   Details Flanking Sequence Details  (Help) Location of Mutation Intron 3 Terminal Phenotype Pigment Defective Nomarski Phenotype   Allelism Evidence Complementation Test; Sequence Identity Database Release September, 2002 Seed Color White Embryo Color White Percent Mutant Seeds 23.6 % Chi - Square 1.2 Seeds Counted 1201 Percent Top Half 45.8 % Chi - Square 2.0 Average Seed Length   Average Embryo Length