Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 166
Gene Information
Gene Symbol
PDE 166
Chromosome Locus
At1g08520
Alleles in Database
2
See List
OR
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Identity Confidence
Confirmed
Alias Symbol
Gene Class
Seed Pigment
Predicted Function
Magnesium Chelatase (CHLD)
Function Details
First committed step in chlorophyll biosynthesis; Insertion of magnesium into protoporphyrin IX
Gene Evidence
Single Border Recovery
Meinke / Syngenta (1 allele)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release
September, 2002
Predicted Sequences
Gene:
4548 nucleotides
mRNA:
2549 nucleotides
Protein:
760 amino acids
cDNA Status
FLcDNA Available:
AY063821
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Brassica napus (90%)
Model Genomes:
Synechocystis (59%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
261695_at
Mutant Information
Allele Symbol
pde 166-1
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
11361
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16086
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 1
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
September, 2002
Seed Color
White
Embryo Color
White
Percent Mutant Seeds
25.7 %
Chi - Square
0.3
Seeds Counted
983
Percent Top Half
51.4 %
Chi - Square
0.2
Average Seed Length
Average Embryo Length