Aug 17, 2018 4:33 PM
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Database Query
SeedGenes Profile: PDE 316
Gene Information
Gene Symbol
PDE 316
Chromosome Locus
At1g63680
Alleles in Database
5
See List
OR
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Identity Confidence
Confirmed
Alias Symbol
APG 13
(K. Shinozaki) Sequence Identity
AtMurE
(H. Takano) Sequence Identity
Gene Class
Seed Pigment
Predicted Function
Similar to Bacterial mur E Protein
Function Details
Diverged from bacterial and moss proteins; Putative role in transcription
Gene Evidence
Border Recovery
Takano / Salk (1 allele)
Border Recovery
Takano / Riken (1 allele)
Border Recovery
Takano / Wisconsin (2 alleles)
Double Border Recovery
Meinke / Syngenta (1 allele)
Database Release
March, 2003
Predicted Sequences
Gene:
2665 nucleotides
mRNA:
2328 nucleotides
Protein:
767 amino acids
cDNA Status
EST Identified
Top BLAST Hits
Arabidopsis
:
Only self hit
Plant ESTs:
Rice (Oryza sativa) (61%)
Model Genomes:
Synechocystis (34%)
Subcellular Localization
TargetP
Targeted to Chloroplasts
SUBA
mRNA Expression Data
NASCArray Spot History for
260292_at
Mutant Information
Allele Symbol
pde 316
Mutant Class
Seed Pigment
Source of Mutant
Meinke / Syngenta
Mutant Line Number
13763
Ecotype
Columbia
Genetic Background
ABRC Stock
CS16226
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Details
(Help)
Location of Mutation
Exon 1 to Intron 2
Terminal Phenotype
Pigment Defective
Nomarski Phenotype
Allelism Evidence
Reference Allele
Database Release
March, 2003
Seed Color
White
Embryo Color
White
Percent Mutant Seeds
25.7 %
Chi - Square
0.3
Seeds Counted
1143
Percent Top Half
46.9 %
Chi - Square
1.1
Average Seed Length
Average Embryo Length