Aug 17, 2018 4:34 PM
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Database Query
SeedGenes Profile: SUS 1
Gene Information
Gene Symbol
SUS 1
Chromosome Locus
At1g01040
Alleles in Database
7
See List
OR
Show All
Identity Confidence
Confirmed
Alias Symbol
SIN 1
(A. Ray) Sequence Identity
CAF
(S. Jacobsen) Sequence Identity
DCL 1
(A. Ray) Alternate Name
EMB 76
(D. Meinke) Alternate Name
Gene Class
Embryo Defective
Predicted Function
RNA Helicase
Function Details
Similar in sequence to a Drosophila protein (Dicer) involved in cleavage of dsRNAs and gene silencing during development
Gene Evidence
Sequenced Mutant Allele
A. Ray (1 allele)
Double Border Recovery
Meinke / Syngenta (4 alleles)
Database Release
March, 2002
Predicted Sequences
Gene:
8082 nucleotides
mRNA:
6251 nucleotides
Protein:
1909 amino acids
cDNA Status
FLcDNA Available:
AF292940
Top BLAST Hits
Arabidopsis
:
AT3G43920.1 (37%)
Plant ESTs:
Medicago truncatula (70%)
Model Genomes:
Caenorhabditis elegans (31%)
Subcellular Localization
TargetP
Not Targeted to Cell Compartment
SUBA
mRNA Expression Data
NASCArray Spot History for
261584_at
Mutant Information
Allele Symbol
sus 1-1
Mutant Class
Embryo Defective
Source of Mutant
Meinke / Feldmann
Mutant Line Number
76
Ecotype
Wassilewskija
Genetic Background
ABRC Stock
CS84713
Mutagen Treatment
T-DNA
Insertion Mutant
Yes
Details
Flanking Sequence
Location of Mutation
Exon 5
Terminal Phenotype
Globular
Details
Nomarski Phenotype
Images
Allelism Evidence
Complementation Test; Sequence Identity
Database Release
March, 2002
Seed Color
Pale Yellow
Embryo Color
Pale Yellow
Percent Mutant Seeds
26.7 %
Chi - Square
1.6
Seeds Counted
1026
Percent Top Half
51.1 %
Chi - Square
0.1
Average Seed Length
490 ± 40 µm
Average Embryo Length
130 ± 40 µm