SeedGenes Profile: APG 6

Gene Information Gene Symbol APG 6 Chromosome Locus At5g15450   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol   Gene Class Seed Pigment Predicted Function Chloroplast Hsp101 Homolog (ClpB3) Function Details Molecular chaperone; Stress response Gene Evidence Border Recovery Myouga / Riken (2 alleles) Border Recovery Myouga / Salk (1 allele) Database Release December, 2010 Predicted Sequences Gene: 4136 nucleotides mRNA: 3186 nucleotides Protein:   968 amino acids cDNA Status EST Identified Top BLAST Hits Arabidopsis: AT2G25140.1 (69%) Plant ESTs: Tomato (Lycopersicon esculentum) (83%) Model Genomes:   Synechocystis (67%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 246554_at

Mutant Information Allele Symbol apg 6-1 apg 6-2 Mutant Class Seed Pigment Seed Pigment Source of Mutant Myouga / Riken Myouga / Riken Mutant Line Number RATM13-1573-1 RATM16-0684-1 Ecotype Nossen Nossen Genetic Background     ABRC Stock     Mutagen Treatment Transposon Transposon Insertion Mutant Yes   Details Yes   Details Flanking Sequence     Location of Mutation 5' UTR Exon 2 Terminal Phenotype Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Sequence Identity Database Release December, 2010 December, 2010 Seed Color     Embryo Color     Percent Mutant Seeds     Chi - Square     Seeds Counted     Percent Top Half     Chi - Square     Average Seed Length     Average Embryo Length