SeedGenes Profile: APG 6

Gene Information Gene Symbol APG 6 Chromosome Locus At5g15450   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol   Gene Class Seed Pigment Predicted Function Chloroplast Hsp101 Homolog (ClpB3) Function Details Molecular chaperone; Stress response Gene Evidence Border Recovery Myouga / Riken (2 alleles) Border Recovery Myouga / Salk (1 allele) Database Release December, 2010 Predicted Sequences Gene: 4136 nucleotides mRNA: 3186 nucleotides Protein:   968 amino acids cDNA Status EST Identified Top BLAST Hits Arabidopsis: AT2G25140.1 (69%) Plant ESTs: Tomato (Lycopersicon esculentum) (83%) Model Genomes:   Synechocystis (67%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 246554_at

Mutant Information Allele Symbol apg 6-1 apg 6-2 apg 6-3 Mutant Class Seed Pigment Seed Pigment Seed Pigment Source of Mutant Myouga / Riken Myouga / Riken Myouga / Salk Mutant Line Number RATM13-1573-1 RATM16-0684-1 SALK_071039 Ecotype Nossen Nossen Columbia Genetic Background       ABRC Stock       Mutagen Treatment Transposon Transposon T-DNA Insertion Mutant Yes   Details Yes   Details Yes   Details Flanking Sequence       Location of Mutation 5' UTR Exon 2 Intron 4 Terminal Phenotype Pigment Defective Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Sequence Identity Sequence Identity Database Release December, 2010 December, 2010 December, 2010 Seed Color       Embryo Color       Percent Mutant Seeds       Chi - Square       Seeds Counted       Percent Top Half       Chi - Square       Average Seed Length       Average Embryo Length