OSU Syngenta vbi

SeedGenes Profile: EMB 2782

Gene Information
Gene Symbol EMB 2782
Chromosome Locus At5g15920   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function SMC Family Protein (MSS2)
Function Details Chromosome dynamics (SMC5)
Gene Evidence
Border Recovery
Meinke / Salk (2 alleles)
Database Release December, 2010
Predicted Sequences
Gene:3877 nucleotides
mRNA: 3279 nucleotides
Protein:  1053 amino acids
cDNA Status EST Identified
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Rice (Oryza sativa) (59%)
Model Genomes:  Homo sapiens (32%)
Subcellular Localization TargetP Not Targeted to Cell Compartment
SUBA
mRNA Expression Data NASCArray Spot History for 246536_at
    
Mutant Information
Allele Symbol emb 2782-1emb 2782-2
Mutant Class Embryo DefectiveEmbryo Defective
Source of Mutant Meinke / SalkMeinke / Salk
Mutant Line Number SALK_107583SALK_092081
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 1Exon 1
Terminal Phenotype Preglobular  DetailsPreglobular  Details
Nomarski Phenotype   Images  Images
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release December, 2010December, 2010
Seed Color White to Pale YellowWhite to Pale Yellow
Embryo Color White to Pale YellowWhite to Pale Yellow
Percent Mutant Seeds 23.3 %28.4 %
Chi - Square 0.41.4
Seeds Counted 275229
Percent Top Half 56.2 %49.2 %
Chi - Square 1<0.1
Average Seed Length 490 ± 100 µm490 ± 110 µm
Average Embryo Length 40 ± 80 µm30 ± 60 µm