OSU Syngenta vbi

SeedGenes Profile: PDE 247

Gene Information
Gene Symbol PDE 247
Chromosome Locus At1g05750   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol CLB 19 (P. Leon) Sequence Identity
Gene Class Seed Pigment
Predicted Function PPR Protein
Function Details Processing of organellar mRNAs
Gene Evidence
Double Border Recovery
Meinke / Syngenta (2 alleles)
Database Release March, 2002
Predicted Sequences
Gene:3226 nucleotides
mRNA: 3226 nucleotides
Protein:  500 amino acids
cDNA Status FLcDNA Available: BX814507
Top BLAST Hits
Arabidopsis: AT2G20540.1 (39%)
Plant ESTs: Medicago truncatula (54%)
Model Genomes:   None
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 261310_at
    
Mutant Information
Allele Symbol pde 247-1pde 247-2
Mutant Class Seed PigmentSeed Pigment
Source of Mutant Meinke / SyngentaMeinke / Syngenta
Mutant Line Number 2314795262
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock CS16065CS16141
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation Exon 1Exon 1
Terminal Phenotype Pigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleComplementation Test; Sequence Identity
Database Release March, 2002September, 2002
Seed Color Pale YellowWhite
Embryo Color Pale YellowWhite
Percent Mutant Seeds 26.0 %24.9 %
Chi - Square 0.4<0.1
Seeds Counted 10331077
Percent Top Half 51.0 %51.5 %
Chi - Square 0.20.2
Average Seed Length   
Average Embryo Length