OSU Syngenta vbi

SeedGenes Profile: PDE 319

Gene Information
Gene Symbol PDE 319
Chromosome Locus At2g24120   tair
Alleles in Database 3   See List OR Show All
Identity Confidence Confirmed
Alias Symbol SCA 3 (J. Micol) Sequence Identity
Gene Class Seed Pigment
Predicted Function Chloroplast DNA-Dependent RNA Polymerase
Function Details Transcription of chloroplast genes
Gene Evidence
Double Border Recovery
Meinke / Syngenta (1 allele)
Border Recovery
Micol / Salk (2 alleles)
Database Release September, 2003
Predicted Sequences
Gene:5727 nucleotides
mRNA: 3536 nucleotides
Protein:  993 amino acids
cDNA Status FLcDNA Available: AK229652
Top BLAST Hits
Arabidopsis: AT1G68990.1 (59%)
Plant ESTs: Nicotiana tabacum (71%)
Model Genomes:  Saccharomyces cerevisiae (38%)
Subcellular Localization TargetP Targeted to Chloroplasts
SUBA
mRNA Expression Data NASCArray Spot History for 265991_at
    
Mutant Information
Allele Symbol pde 319sca 3-2
Mutant Class Seed PigmentSeed Pigment
Source of Mutant Meinke / SyngentaMicol / Salk
Mutant Line Number 11913SALK_093884
Ecotype ColumbiaColumbia
Genetic Background   
ABRC Stock CS16229 
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence Details  (Help) 
Location of Mutation Exon 2Intron 3
Terminal Phenotype Pigment DefectivePigment Defective
Nomarski Phenotype
Allelism Evidence Reference AlleleSequence Identity
Database Release September, 2003October, 2007
Seed Color Pale Yellow 
Embryo Color Pale Yellow 
Percent Mutant Seeds 25.5 % 
Chi - Square 0.1 
Seeds Counted 1143 
Percent Top Half 50.5 % 
Chi - Square <0.1 
Average Seed Length   
Average Embryo Length