OSU Syngenta vbi

SeedGenes Profile: SUS 1

Gene Information
Gene Symbol SUS 1
Chromosome Locus At1g01040   tair
Alleles in Database 7   See List OR Show All
Identity Confidence Confirmed
Alias Symbol SIN 1 (A. Ray) Sequence Identity
CAF (S. Jacobsen) Sequence Identity
DCL 1 (A. Ray) Alternate Name
EMB 76 (D. Meinke) Alternate Name
Gene Class Embryo Defective
Predicted Function RNA Helicase
Function Details Similar in sequence to a Drosophila protein (Dicer) involved in cleavage of dsRNAs and gene silencing during development
Gene Evidence
Sequenced Mutant Allele
A. Ray (1 allele)
Double Border Recovery
Meinke / Syngenta (4 alleles)
Database Release March, 2002
Predicted Sequences
Gene:8082 nucleotides
mRNA: 6251 nucleotides
Protein:  1909 amino acids
cDNA Status FLcDNA Available: AF292940
Top BLAST Hits
Arabidopsis: AT3G43920.1 (37%)
Plant ESTs: Medicago truncatula (70%)
Model Genomes:  Caenorhabditis elegans (31%)
Subcellular Localization TargetP Not Targeted to Cell Compartment
mRNA Expression Data NASCArray Spot History for 261584_at
Mutant Information
Allele Symbol sus 1-4
Mutant Class Embryo Defective
Source of Mutant Meinke / Syngenta
Mutant Line Number 9156
Ecotype Columbia
Genetic Background  
ABRC Stock CS16068
Mutagen Treatment T-DNA
Insertion Mutant Yes   Details
Flanking Sequence Details  (Help)
Location of Mutation Exon 15
Terminal Phenotype Globular  Details
Nomarski Phenotype   Images
Allelism Evidence Reference Allele
Database Release March, 2002
Seed Color White to Pale Yellow
Embryo Color White to Pale Yellow
Percent Mutant Seeds 24.5 %
Chi - Square 0.1
Seeds Counted 1064
Percent Top Half 54.0 %
Chi - Square 1.7
Average Seed Length 470 ± 40 µm
Average Embryo Length 50 ± 10 µm