OSU Syngenta vbi

SeedGenes Profile: AtSWI 3A

Gene Information
Gene Symbol AtSWI 3A
Chromosome Locus At2g47620   tair
Alleles in Database 4   See List OR Show All
Identity Confidence Confirmed
Alias Symbol  
Gene Class Embryo Defective
Predicted Function DNA Binding Protein
Function Details Subunit of SWI/SNF chromatin remodeling complex
Gene Evidence
Double Border Recovery
Jerzmanowski / Salk (1 allele)
Double Border Recovery
Meinke; Jerzmanowski / Salk (2 alleles)
Single Border Recovery
Meinke / Salk (1 allele)
Database Release October, 2007
Predicted Sequences
Gene:2455 nucleotides
mRNA: 1776 nucleotides
Protein:  512 amino acids
cDNA Status FLcDNA Available: AY062794
Top BLAST Hits
Arabidopsis: Only self hit
Plant ESTs: Brassica napus (69%)
Model Genomes:   None
Subcellular Localization TargetP Not Targeted to Cell Compartment
mRNA Expression Data NASCArray Spot History for 245149_at
Mutant Information
Allele Symbol atswi 3a-2atswi 3a-1atswi 3a-3atswi 3a-4
Mutant Class Embryo DefectiveEmbryo DefectiveEmbryo DefectiveEmbryo Defective
Source of Mutant Meinke; Jerzmanowski / SalkJerzmanowski / SalkMeinke; Jerzmanowski / SalkMeinke / Salk
Mutant Line Number SALK_065548SALK_035320SALK_068234SALK_039867
Ecotype ColumbiaColumbiaColumbiaColumbia
Genetic Background     
ABRC Stock     
Mutagen Treatment T-DNAT-DNAT-DNAT-DNA
Insertion Mutant Yes   DetailsYes   DetailsYes   DetailsYes   Details
Flanking Sequence     
Location of Mutation Exon 2Exon 3Exon 3Exon 3
Terminal Phenotype Preglobular  DetailsGlobularPreglobular  DetailsPreglobular  Details
Nomarski Phenotype Early Globular  ImagesEarly Globular  ImagesGlobular  Images
Allelism Evidence Reference AlleleSequence IdentityComplementation Test; Sequence IdentityComplementation Test; Sequence Identity
Database Release October, 2007October, 2007October, 2007October, 2007
Seed Color White WhiteWhite
Embryo Color White WhiteWhite
Percent Mutant Seeds 27.0 % 23.4 %24.8 %
Chi - Square 2.3 1.4<0.1
Seeds Counted 1109 10291052
Percent Top Half 44.5 % 46.9 %50.6 %
Chi - Square 3.4 0.93<0.1
Average Seed Length 370 ± 100 µm 420 ± 70 µm480 ± 70 µm
Average Embryo Length 20 ± 10 µm 15 ± 0 µm20 ± 20 µm