SeedGenes Profile: EMB 1644

Gene Information Gene Symbol EMB 1644 Chromosome Locus At5g27720   Alleles in Database 2   See List OR Show All Identity Confidence Confirmed Alias Symbol   Gene Class Embryo Defective Predicted Function U6 snRNA Associated Protein (LSm4) Function Details Component of spliceosome involved in pre-mRNA splicing Gene Evidence Double Border Recovery Meinke / Syngenta (2 alleles) Database Release March, 2003 Predicted Sequences Gene: 2044 nucleotides mRNA: 912 nucleotides Protein:   129 amino acids cDNA Status FLcDNA Available: AY087911 Top BLAST Hits Arabidopsis: Only self hit Plant ESTs: Medicago truncatula (98%) Model Genomes:   Drosophila melanogaster (82%) Subcellular Localization TargetP Not Targeted to Cell Compartment SUBA mRNA Expression Data NASCArray Spot History for 246741_at

Mutant Information Allele Symbol emb 1644-2 emb 1644-1 Mutant Class Embryo Defective Embryo Defective Source of Mutant Meinke / Syngenta Meinke / Syngenta Mutant Line Number 32187 50481 Ecotype Columbia Columbia Genetic Background     ABRC Stock CS16156 CS16157 Mutagen Treatment T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Flanking Sequence Details  (Help) Details Location of Mutation Exon 5 to Downstream Exon 1 in 5' UTR Terminal Phenotype Globular  Details Globular  Details Nomarski Phenotype   Images   Images Allelism Evidence Reference Allele Complementation Test; Sequence Identity Database Release March, 2003 March, 2003 Seed Color White White Embryo Color White White Percent Mutant Seeds 24.0 % 24.5 % Chi - Square 0.6 0.2 Seeds Counted 1116 1046 Percent Top Half 50.4 % 45.7 % Chi - Square <0.1 1.9 Average Seed Length 520 ± 50 µm 510 ± 60 µm Average Embryo Length 30 ± 20 µm 40 ± 20 µm