OSU Syngenta vbi

SeedGenes Profile: EMB 3011

Gene Information
Gene Symbol EMB 3011
Chromosome Locus At5g13010   tair
Alleles in Database 2   See List OR Show All
Identity Confidence Confirmed
Alias Symbol OMA (U. Grossniklaus) Alternate Name
Gene Class Embryo Defective
Predicted Function RNA Helicase
Function Details Similar to pre-mRNA splicing factor PRP16
Gene Evidence
Single Border Recovery
Meinke / Genoplante (1 allele)
Single Border Recovery
Meinke / Salk (1 allele)
Database Release September, 2004
Predicted Sequences
Gene:6442 nucleotides
mRNA: 4209 nucleotides
Protein:  1226 amino acids
cDNA Status EST Identified
Top BLAST Hits
Arabidopsis: AT3G26560.1 (47%)
Plant ESTs: Rice (Oryza sativa) (80%)
Model Genomes:  Danio rerio (62%)
Subcellular Localization TargetP Not Targeted to Cell Compartment
SUBA
mRNA Expression Data NASCArray Spot History for 250273_at
    
Mutant Information
Allele Symbol emb 3011-1emb 3011-2
Mutant Class Embryo DefectiveEmbryo Defective
Source of Mutant Meinke / GenoplanteMeinke / Salk
Mutant Line Number FBV6SALK_019541
Ecotype WassilewskijaColumbia
Genetic Background   
ABRC Stock   
Mutagen Treatment T-DNAT-DNA
Insertion Mutant Yes   DetailsYes   Details
Flanking Sequence   
Location of Mutation UpstreamExon 13
Terminal Phenotype Globular  DetailsPreglobular  Details
Nomarski Phenotype   Images
Allelism Evidence Reference AlleleSequence Identity
Database Release September, 2004December, 2010
Seed Color Pale YellowPale Yellow
Embryo Color Pale YellowPale Yellow
Percent Mutant Seeds 25.0 %15.1 %
Chi - Square 0.016.4
Seeds Counted 897317
Percent Top Half 53.1 %81.2 %
Chi - Square 0.918.8
Average Seed Length 450 ± 60 µm310 ± 150 µm
Average Embryo Length 70 ± 30 µm15 ± 0 µm