SeedGenes Profile: PDE 226

Gene Information Gene Symbol PDE 226 Chromosome Locus At4g14210   Alleles in Database 3   See List OR Show All Identity Confidence Confirmed Alias Symbol PDS 3 (TAIR) Sequence Identity Gene Class Seed Pigment Predicted Function Phytoene Desaturase Function Details Carotenoid biosynthesis Gene Evidence Double Border Recovery Meinke / Syngenta (1 allele) Molecular Complementation L.J. Qu (1 allele) Border Recovery L.J. Qu (1 allele) Border Recovery Qu / Salk (1 allele) Database Release March, 2002 Predicted Sequences Gene: 5054 nucleotides mRNA: 2213 nucleotides Protein:   566 amino acids cDNA Status FLcDNA Available: AF360196 Top BLAST Hits Arabidopsis: AT3G04870.1 (30%) Plant ESTs: Soybean (Glycine max) (81%) Model Genomes:   Synechocystis (65%) Subcellular Localization TargetP Targeted to Chloroplasts SUBA mRNA Expression Data NASCArray Spot History for 245284_at

Mutant Information Allele Symbol pde 226 pds 3-1 Mutant Class Seed Pigment Seed Pigment Source of Mutant Meinke / Syngenta LJ Qu Mutant Line Number 19414 ZHJ070204 Ecotype Uncertain Columbia Genetic Background     ABRC Stock CS16064   Mutagen Treatment T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Flanking Sequence Details  (Help)   Location of Mutation Intron 12 Intron 2 Terminal Phenotype Pigment Defective Pigment Defective Nomarski Phenotype Allelism Evidence Reference Allele Sequence Identity Database Release March, 2002 December, 2010 Seed Color White   Embryo Color White   Percent Mutant Seeds 24.0 %   Chi - Square 0.6   Seeds Counted 806   Percent Top Half 53.0 %   Chi - Square 0.3   Average Seed Length     Average Embryo Length