SeedGenes Profile: SUS 1

Gene Information Gene Symbol SUS 1 Chromosome Locus At1g01040   Alleles in Database 7   See List OR Show All Identity Confidence Confirmed Alias Symbol SIN 1 (A. Ray) Sequence Identity CAF (S. Jacobsen) Sequence Identity DCL 1 (A. Ray) Alternate Name EMB 76 (D. Meinke) Alternate Name Gene Class Embryo Defective Predicted Function RNA Helicase Function Details Similar in sequence to a Drosophila protein (Dicer) involved in cleavage of dsRNAs and gene silencing during development Gene Evidence Sequenced Mutant Allele A. Ray (1 allele) Double Border Recovery Meinke / Syngenta (4 alleles) Database Release March, 2002 Predicted Sequences Gene: 8082 nucleotides mRNA: 6251 nucleotides Protein:   1909 amino acids cDNA Status FLcDNA Available: AF292940 Top BLAST Hits Arabidopsis: AT3G43920.1 (37%) Plant ESTs: Medicago truncatula (70%) Model Genomes:   Caenorhabditis elegans (31%) Subcellular Localization TargetP Not Targeted to Cell Compartment SUBA mRNA Expression Data NASCArray Spot History for 261584_at

Mutant Information Allele Symbol sus 1-4 sus 1-5 Mutant Class Embryo Defective Embryo Defective Source of Mutant Meinke / Syngenta Meinke / Syngenta Mutant Line Number 9156 12727 Ecotype Columbia Columbia Genetic Background     ABRC Stock CS16068 CS16069 Mutagen Treatment T-DNA T-DNA Insertion Mutant Yes   Details Yes   Details Flanking Sequence Details  (Help) Details Location of Mutation Exon 15 Exon 1 Terminal Phenotype Globular  Details Globular  Details Nomarski Phenotype   Images   Images Allelism Evidence Reference Allele Complementation Test; Sequence Identity Database Release March, 2002 March, 2002 Seed Color White to Pale Yellow Pale Yellow Embryo Color White to Pale Yellow Pale Yellow Percent Mutant Seeds 24.5 % 26.5 % Chi - Square 0.1 1.5 Seeds Counted 1064 1210 Percent Top Half 54.0 % 51.7 % Chi - Square 1.7 0.4 Average Seed Length 470 ± 40 µm 530 ± 40 µm Average Embryo Length 50 ± 10 µm 140 ± 50 µm